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BLAST query
BLAT query
Gene Family Keyword Search
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All Nodes
Andropogoneae
Angiosperm
Arabidopsis
Embryophyte
Eudicot
Eurosid I
Eurosid II
Grass Post-duplication
Grass Pre-duplication
Legume
Malpighiales
Rosid post-hexaploidy
Rosid pre-hexaploidy
Tracheophyte
Viridiplantae
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Ontologies
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Everything
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Cluster KEGG Orthology
Family members:
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(+)
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(+/-)
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(-)
Manihot esculenta
Manihot esculenta
Ricinus communis
Ricinus communis
Populus trichocarpa
Populus trichocarpa
Medicago truncatula
Medicago truncatula
Glycine max
Glycine max
Cucumis sativus
Cucumis sativus
Arabidopsis thaliana
Arabidopsis thaliana
Arabidopsis lyrata
Arabidopsis lyrata
Carica papaya
Carica papaya
Vitis vinifera
Vitis vinifera
Mimulus guttatus
Mimulus guttatus
Sorghum bicolor
Sorghum bicolor
Zea mays
Zea mays
Oryza sativa
Oryza sativa
Brachypodium distachyon
Brachypodium distachyon
Selaginella moellendorfii
Selaginella moellendorfii
Physcomitrella patens
Physcomitrella patens
Chlamydomonas reinhardtii
Chlamydomonas reinhardtii
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query
Query Name (optional)
Query Sequence
target
Type
Organism proteome
Organism genome
Target
Select a node:
Andropogoneae
Angiosperm
Arabidopsis
Embryophyte
Eudicot
Eurosid I
Eurosid II
Grass Post-duplication
Grass Pre-duplication
Legume
Malpighiales
RosidPostHex
RosidPreHex
Tracheophyte
Viridiplantae
Select a proteome:
Prunus persica
Select a genome:
Prunus persica
Prunus persica - masked
Zea mays B73 RefGen_v2
Zea mays B73 RefGen_v2 - masked
parameters
BLAST program
BLASTP - protein query to protein db
BLASTX - translated (6 frames) nucl. query to protein db
BLASTN - nucleotide query to nucleotide db
TBLASTX - transl. (6 frames) nucl. query to transl (6) nt db
TBLASTN - protein query to translated (6 frames) nt db
Output format
gapped alignments
nongapped alignments
Comparison Matrix
BLOSUM62
BLOSUM45
PAM30
PAM70
Word Length (W value)
default
50
45
40
35
30
25
20
15
14
13
12
11
10
9
8
7
6
5
4
3
2
Default = 11 for BLASTN, 3 for all others
Expect(E) threshold
# of alignments to show
1
25
50
100
200
400
800
1000
Filter options
On
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Include singletons
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address:
query
Query Name (optional)
Query Sequence
target
Target
Select a genome:
Zea mays B73 RefGen_v2
Masking:
No
Yes
parameters
Minimum number of matches:
(default = 2)
Minimum score:
(default = 30)
Minimum identity (%):
(default = 90)
Maximum gap:
(default = 2)
Tile size:
(default = 11)
Maximum intron size:
(default = 750000)
Mask query sequences:
none
lower case letters
upper case letters
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