84 ontologies searched:

ID Type Description
PF10744PFAMmediator of rna polymerase ii transcription subunit 1
PF00352PFAMtranscription factor tfiid (or tata-binding protein, tbp)
PF03529PFAMotx1 transcription factor
PF10380PFAMtranscription factor crf1
PF10680PFAMrna polymerase i specific transcription initiation factor
PF04001PFAMtranscription factor vhr1
PF06529PFAMvertebrate interleukin-3 regulated transcription factor
PF10232PFAMmediator of rna polymerase ii transcription
PF02200PFAMste like transcription factor
PF08711PFAMtranscription elongation factor s-ii protein n terminal
PF08618PFAMtranscription factor opi1
PF00382PFAMtranscription factor tfiib repeat
PF06137PFAMtranscription elongation factor a, sii-related family
PF05718PFAMpoxvirus intermediate transcription factor
PF10278PFAMmediator of rna pol ii transcription subunit 19
PF06331PFAMtranscription factor tfiih complex subunit tfb5
PF03849PFAMtranscription factor tfb2
PF02270PFAMtranscription initiation factor iif, beta subunit
PF04082PFAMfungal specific transcription factor domain
PF00170PFAMbzip transcription factor
PF03299PFAMtranscription factor ap-2
PF02751PFAMtranscription initiation factor iia, gamma subunit, beta-barrel domain
PF03847PFAMtranscription initiation factor tfiid subunit a
PF03153PFAMtranscription factor iia, alpha/beta subunit
PF04441PFAMpoxvirus early transcription factor (vetf), large subunit
PF06546PFAMvertebrate heat shock transcription factor
PF06445PFAMbacterial transcription activator, effector binding domain
PF03294PFAMrna polymerase-associated transcription specificity factor, rap94
PF09748PFAMtranscription factor subunit med10
PF05327PFAMrna polymerase i specific transcription initiation factor rrn3
PF00319PFAMsrf-type transcription factor (dna-binding and dimerisation domain)
PF08765PFAMmor transcription activator family
PF04589PFAMrfx1 transcription activation region
PF04704PFAMzfx / zfy transcription activation region
PF03449PFAMprokaryotic transcription elongation factor, grea/greb, n-terminal domain
PF01272PFAMprokaryotic transcription elongation factor, grea/greb, c-terminal domain
PF04640PFAMplatz transcription factor
PF03850PFAMtranscription factor tfb4
PF00859PFAMctf/nf-i family transcription modulation region
PF08781PFAMtranscription factor dp
PF09114PFAMtranscription factor mota, activation domain
PF05129PFAMtranscription elongation factor elf1 like
PF04947PFAMpoxvirus late transcription factor vltf3 like
PF02467PFAMtranscription factor whib
PF03957PFAMjun-like transcription factor
PF03326PFAMherpesvirus transcription activation factor (transactivator)
PF06093PFAMtranscription elongation protein spt4
PF02269PFAMtranscription initiation factor iid, 18kd subunit
PF09341PFAMtranscription factor pcc1
PF02268PFAMtranscription initiation factor iia, gamma subunit, helical domain
PF03514PFAMgras family transcription factor
PF08731PFAMtranscription factor aft
PF10406PFAMtranscription factor tfiid complex subunit 8 c-term
PF07544PFAMrna polymerase ii transcription mediator
PF07073PFAMmodulator of rho-dependent transcription termination (rof)
PF02291PFAMtranscription initiation factor iid, 31kd subunit
PF07704PFAMrv0623-like transcription factor
PF00808PFAMhistone-like transcription factor (cbf/nf-y) and archaeal histone
PF07500PFAMtranscription factor s-ii (tfiis), central domain
PF03333PFAMadhesin biosynthesis transcription regulatory protein
PF05397PFAMtranscription regulatory protein gal11
PF03131PFAMbzip maf transcription factor
PF05236PFAMtranscription initiation factor tfiid component taf4 family
PF03634PFAMtcp family transcription factor
PF10163PFAMtranscription factor e(y)2
PF00605PFAMinterferon regulatory factor transcription factor
PF09734PFAMrna polymerase iii transcription factor (tf)iiic subunit
PF08601PFAMtranscription factor pap1
PF08474PFAMmyelin transcription factor 1
PF03540PFAMtranscription initiation factor tfiid 23-30kda subunit
PF04761PFAMlactococcus bacteriophage putative transcription regulator
PF06881PFAMrna polymerase ii transcription factor siii (elongin) subunit a
PF01096PFAMtranscription factor s-ii (tfiis)
PF08744PFAMplant transcription factor nozzle
PF09510PFAMrtt102p-like transcription regulator protein
PF10545PFAMalcohol dehydrogenase transcription factor myb/sant-like
PF08536PFAMwhirly transcription factor
PF02045PFAMccaat-binding transcription factor (cbf-b/nf-ya) subunit b
PF04621PFAMpea3 subfamily ets-domain transcription factor n terminal domain
PF05793PFAMtranscription initiation factor iif, alpha subunit (tfiif-alpha)
PF02357PFAMtranscription termination factor nusg
PF04516PFAMcp2 transcription factor
PF05349PFAMgata-type transcription activator, n-terminal
PF09497PFAMtranscription mediator subunit med12

11300 families found

SEARCH CRITERIA   revise your search
Search term: transcription
Search node: All Nodes
Member filtering: none
Search type: Ontology [ pfam ]

1 - 100 of 11300 families    show:   First | Previous | Next | Last

Clusters retrieved:




  SIZENODE DESCRIPTION
 
7629 Viridiplantae Hypothetical gene (#23248736)
448
382
692
552
743
350
470
428
274
557
370
495
436
532
418
319
152
11
 -
4937 Viridiplantae Hypothetical gene (#23248664)
224
200
560
390
427
115
134
141
124
531
207
431
276
693
369
63
52
-
 -
4937 Embryophyte Hypothetical gene (#23102620)
224
200
560
390
427
115
134
141
124
531
207
431
276
693
369
63
52
-
 -
3148 Tracheophyte Hypothetical gene (#22961462)
99
107
397
271
207
38
62
64
45
420
122
308
149
579
280
-
-
-
 -
3141 Angiosperm Hypothetical gene (#22888914)
97
104
397
269
207
38
62
64
45
420
122
308
149
579
280
-
-
-
 -
1256 Viridiplantae Hypothetical gene (#23249054)
95
63
105
55
161
66
70
73
59
62
75
73
88
75
65
33
38
-
 -
1216 Eudicot Hypothetical gene (#22632190)
63
65
318
193
124
26
29
25
31
318
24
-
-
-
-
-
-
-
 -
1161 Rosid Pre-Duplication Hypothetical gene (#22522389)
63
62
290
193
124
26
29
25
31
318
-
-
-
-
-
-
-
-
 -
800 Viridiplantae Hypothetical gene (#23249161)
78
40
95
197
42
23
27
26
46
28
23
35
9
50
79
2
-
-
 -
800 Embryophyte Hypothetical gene (#23103114)
78
40
95
197
42
23
27
26
46
28
23
35
9
50
79
2
-
-
 -
800 Tracheophyte Hypothetical gene (#22961952)
78
40
95
197
42
23
27
26
46
28
23
35
9
50
79
2
-
-
 -
707 Viridiplantae mads box protein, putative
44
25
49
43
66
19
33
40
148
29
45
36
42
37
32
7
12
-
 -
681 Embryophyte Hypothetical gene (#23103009)
51
34
51
29
88
40
41
41
34
30
44
39
46
39
36
19
19
-
 -
681 Rosid Post-Duplication Hypothetical gene (#22414744)
34
28
213
101
85
16
4
4
9
187
-
-
-
-
-
-
-
-
 -
380 Viridiplantae Hypothetical gene (#23249153)
17
26
20
26
20
54
57
74
9
3
62
3
3
3
2
-
1
-
 -
348 Viridiplantae Hypothetical gene (#23249362)
26
21
37
21
55
12
14
14
9
11
12
29
31
30
21
3
2
-
 -
348 Embryophyte Hypothetical gene (#23103323)
26
21
37
21
55
12
14
14
9
11
12
29
31
30
21
3
2
-
 -
278 Viridiplantae Hypothetical gene (#23249517)
21
16
26
16
37
14
15
15
16
18
19
11
11
12
11
10
10
-
 -
278 Embryophyte Hypothetical gene (#23103479)
21
16
26
16
37
14
15
15
16
18
19
11
11
12
11
10
10
-
 -
264 Viridiplantae Hypothetical gene (#23250895)
17
11
21
8
27
14
17
16
13
13
14
18
28
18
18
3
8
-
 -
264 Embryophyte Hypothetical gene (#23104835)
17
11
21
8
27
14
17
16
13
13
14
18
28
18
18
3
8
-
 -
250 Viridiplantae Hypothetical gene (#23249766)
26
11
29
13
36
12
16
15
10
13
14
12
14
12
11
-
6
-
 -
250 Embryophyte Hypothetical gene (#23103720)
26
11
29
13
36
12
16
15
10
13
14
12
14
12
11
-
6
-
 -
247 Embryophyte Hypothetical gene (#23103372)
14
6
17
8
10
7
9
11
55
7
21
17
20
20
17
6
2
-
 -
244 Tracheophyte Hypothetical gene (#22962600)
26
11
29
13
36
12
16
15
10
13
14
12
14
12
11
-
-
-
 -
243 Angiosperm Hypothetical gene (#22942151)
25
11
29
13
36
12
16
15
10
13
14
12
14
12
11
-
-
-
 -
239 Embryophyte unknown protein
4
5
5
22
9
2
110
67
2
2
7
1
1
1
1
-
-
-
 -
239 Tracheophyte unknown protein
4
5
5
22
9
2
110
67
2
2
7
1
1
1
1
-
-
-
 -
230 Viridiplantae Hypothetical gene (#23249686)
18
11
19
11
29
12
11
12
11
10
12
12
12
12
14
10
13
1
 -
219 Angiosperm unknown protein
4
5
5
14
9
2
104
61
2
2
7
1
1
1
1
-
-
-
 -
215 Eudicot F-box family protein
4
5
5
14
9
2
104
61
2
2
7
-
-
-
-
-
-
-
 -
214 Viridiplantae Hypothetical gene (#23255294)
9
6
10
22
34
4
17
5
74
6
9
5
3
10
-
-
-
-
 -
214 Embryophyte Hypothetical gene (#23109262)
9
6
10
22
34
4
17
5
74
6
9
5
3
10
-
-
-
-
 -
213 Viridiplantae Hypothetical gene (#23249417)
16
12
19
13
30
10
13
14
10
12
12
13
12
11
11
4
1
-
 -
213 Embryophyte Hypothetical gene (#23103378)
16
12
19
13
30
10
13
14
10
12
12
13
12
11
11
4
1
-
 -
212 Tracheophyte Hypothetical gene (#22962221)
16
12
19
13
30
10
13
14
10
12
12
13
12
11
11
4
-
-
 -
206 Viridiplantae Hypothetical gene (#23251177)
20
12
19
11
26
12
14
14
10
9
7
11
14
11
11
1
4
-
 -
206 Embryophyte Hypothetical gene (#23105124)
20
12
19
11
26
12
14
14
10
9
7
11
14
11
11
1
4
-
 -
201 Tracheophyte similar to PHERES 1; [ co-ortholog (1of2) of At1g65300, At1g65330, ]
8
5
8
19
31
3
16
5
74
5
9
5
3
10
-
-
-
-
 -
187 Eudicot Hypothetical gene (#22550252)
24
11
29
13
36
10
16
15
9
11
13
-
-
-
-
-
-
-
 -
187 Rosid Pre-Duplication unknown protein
1
1
1
13
7
1
102
59
1
1
-
-
-
-
-
-
-
-
 -
185 Rosid Post-Duplication unknown protein
1
1
1
12
6
1
102
59
1
1
-
-
-
-
-
-
-
-
 -
183 Viridiplantae HTB4; DNA binding
8
7
13
14
16
4
11
13
5
6
8
13
14
11
12
3
1
24
 -
178 Embryophyte Hypothetical gene (#23102753)
6
5
6
23
22
1
3
5
81
7
9
5
3
1
1
-
-
-
 -
178 Tracheophyte Hypothetical gene (#22961593)
6
5
6
23
22
1
3
5
81
7
9
5
3
1
1
-
-
-
 -
177 Viridiplantae Hypothetical gene (#23249103)
14
9
16
7
20
8
10
11
8
10
8
11
17
12
11
3
2
-
 -
177 Embryophyte Hypothetical gene (#23103058)
14
9
16
7
20
8
10
11
8
10
8
11
17
12
11
3
2
-
 -
177 Tracheophyte Hypothetical gene (#22962716)
11
7
13
14
20
3
6
6
6
11
5
31
21
12
10
1
-
-
 -
176 Angiosperm Hypothetical gene (#22886178)
11
7
13
14
20
3
6
6
6
11
5
31
21
12
10
-
-
-
 -
164 Viridiplantae Hypothetical gene (#23250646)
11
7
12
9
18
8
10
10
7
9
10
8
11
7
7
9
10
1
 -
163 Viridiplantae Hypothetical gene (#23252643)
1
1
2
1
2
1
1
1
1
1
1
32
22
53
40
1
1
1
 -
163 Embryophyte Hypothetical gene (#23104593)
11
7
12
9
18
8
10
10
7
9
10
8
11
7
7
9
10
-
 -
162 Embryophyte Hypothetical gene (#23106601)
1
1
2
1
2
1
1
1
1
1
1
32
22
53
40
1
1
-
 -
161 Tracheophyte Hypothetical gene (#22965657)
1
1
2
1
2
1
1
1
1
1
1
32
22
53
40
1
-
-
 -
160 Angiosperm Hypothetical gene (#22845016)
1
1
2
1
2
1
1
1
1
1
1
32
22
53
40
-
-
-
 -
159 Embryophyte Hypothetical gene (#23106883)
8
7
13
14
16
4
11
13
5
6
8
13
14
11
12
3
1
-
 -
154 Tracheophyte Hypothetical gene (#22965961)
7
7
13
14
16
4
11
12
5
6
8
13
14
11
12
1
-
-
 -
153 Angiosperm Hypothetical gene (#22926818)
7
7
13
14
16
4
11
12
5
6
8
13
14
11
12
-
-
-
 -
152 Viridiplantae Ocs element-binding factor, putative
9
6
9
3
15
8
12
16
5
9
24
8
10
9
9
-
-
-
 -
152 Embryophyte Ocs element-binding factor, putative
9
6
9
3
15
8
12
16
5
9
24
8
10
9
9
-
-
-
 -
145 Angiosperm Hypothetical gene (#22829382)
6
5
6
23
19
1
3
5
59
7
9
1
1
-
-
-
-
-
 -
143 Viridiplantae mads box protein, putative
21
9
19
13
25
10
9
9
7
10
9
1
-
-
-
1
-
-
 -
143 Embryophyte mads box protein, putative
21
9
19
13
25
10
9
9
7
10
9
1
-
-
-
1
-
-
 -
143 Tracheophyte mads box protein, putative
21
9
19
13
25
10
9
9
7
10
9
1
-
-
-
1
-
-
 -
143 Eudicot Hypothetical gene (#22580032)
6
5
6
23
19
1
3
5
59
7
9
-
-
-
-
-
-
-
 -
142 Viridiplantae Hypothetical gene (#23252984)
14
9
18
6
24
8
6
7
9
8
8
5
7
5
4
2
2
-
 -
142 Embryophyte Hypothetical gene (#23106946)
14
9
18
6
24
8
6
7
9
8
8
5
7
5
4
2
2
-
 -
142 Angiosperm Hypothetical gene (#22857616)
21
9
19
13
25
10
9
9
7
10
9
1
-
-
-
-
-
-
 -
141 Eudicot Hypothetical gene (#22598788)
21
9
19
13
25
10
9
9
7
10
9
-
-
-
-
-
-
-
 -
131 Rosid Pre-Duplication mads box protein, putative
21
9
19
13
25
10
9
9
7
9
-
-
-
-
-
-
-
-
 -
131 Rosid Post-Duplication mads box protein, putative
21
9
19
13
25
10
9
9
7
9
-
-
-
-
-
-
-
-
 -
130 Rosid Pre-Duplication Hypothetical gene (#22466836)
6
5
6
23
19
1
2
3
58
7
-
-
-
-
-
-
-
-
 -
124 Viridiplantae Hypothetical gene (#23256822)
14
10
13
4
19
10
7
10
8
8
10
2
3
2
2
-
1
1
 -
124 Rosid Post-Duplication Hypothetical gene (#22356891)
6
5
5
23
19
1
2
3
57
3
-
-
-
-
-
-
-
-
 -
123 Viridiplantae Hypothetical gene (#23250317)
9
6
9
4
20
8
8
8
5
6
9
7
8
7
7
1
1
-
 -
123 Embryophyte Hypothetical gene (#23104266)
9
6
9
4
20
8
8
8
5
6
9
7
8
7
7
1
1
-
 -
123 Embryophyte Hypothetical gene (#23110788)
14
10
13
4
19
10
7
10
8
8
10
2
3
2
2
-
1
-
 -
123 Grass Pre-Duplication Hypothetical gene (#22816956)
-
-
-
-
-
-
-
-
-
-
-
26
19
45
33
-
-
-
 -
122 Tracheophyte Hypothetical gene (#22970107)
14
10
13
4
19
10
7
10
8
8
10
2
3
2
2
-
-
-
 -
122 Angiosperm Hypothetical gene (#22867453)
14
10
13
4
19
10
7
10
8
8
10
2
3
2
2
-
-
-
 -
113 Eudicot ccaat-binding transcription factor subunit A, putative
14
10
13
4
19
10
7
10
8
8
10
-
-
-
-
-
-
-
 -
105 Grass Post-Duplication Hypothetical gene (#22743528)
-
-
-
-
-
-
-
-
-
-
-
25
18
37
25
-
-
-
 -
104 Viridiplantae Hypothetical gene (#23251940)
8
5
10
5
14
7
5
5
4
6
5
6
8
7
6
1
2
-
 -
104 Embryophyte Hypothetical gene (#23105888)
8
5
10
5
14
7
5
5
4
6
5
6
8
7
6
1
2
-
 -
103 Eudicot Hypothetical gene (#22633011)
7
7
13
14
16
4
11
12
5
6
8
-
-
-
-
-
-
-
 -
103 Rosid Pre-Duplication Hypothetical gene (#22452044)
14
10
13
4
19
10
7
10
8
8
-
-
-
-
-
-
-
-
 -
102 Tracheophyte Hypothetical gene (#22961624)
5
6
11
5
13
6
4
4
5
6
5
8
8
8
6
2
-
-
 -
101 Tracheophyte Transcription factor HBP-1b(c1), putative
7
3
7
5
14
5
5
5
4
4
7
8
9
8
8
2
-
-
 -
100 Eudicot Hypothetical gene (#22596352)
11
7
13
14
19
3
6
6
6
11
4
-
-
-
-
-
-
-
 -
100 Rosid Pre-Duplication Hypothetical gene (#22460252)
14
7
19
8
21
4
8
8
4
7
-
-
-
-
-
-
-
-
 -
99 Angiosperm Hypothetical gene (#22875296)
7
3
7
5
14
5
5
5
4
4
7
8
9
8
8
-
-
-
 -
99 Rosid Post-Duplication ccaat-binding transcription factor subunit A, putative
14
10
12
4
19
10
6
9
7
8
-
-
-
-
-
-
-
-
 -
96 Rosid Pre-Duplication Hypothetical gene (#22455069)
11
7
13
14
19
3
6
6
6
11
-
-
-
-
-
-
-
-
 -
96 Rosid Post-Duplication Hypothetical gene (#22345726)
14
7
17
8
20
4
8
8
4
6
-
-
-
-
-
-
-
-
 -
95 Viridiplantae similar to bZIP transcription factor 3. [ORG:Phaseolus vulgaris]; [ co-ortholog (1of2) of At2g35530, T12092, AAK...
5
3
6
8
13
3
5
5
5
3
5
7
8
7
7
2
3
-
 -
95 Embryophyte similar to bZIP transcription factor 3. [ORG:Phaseolus vulgaris]; [ co-ortholog (1of2) of At2g35530, T12092, AAK...
5
3
6
8
13
3
5
5
5
3
5
7
8
7
7
2
3
-
 -
95 Rosid Pre-Duplication Histone core Histone-fold
7
7
13
14
16
4
11
12
5
6
-
-
-
-
-
-
-
-
 -
95 EurosidII unknown protein
-
-
-
-
-
-
64
30
1
-
-
-
-
-
-
-
-
-
 -
94 Viridiplantae Hypothetical gene (#23248911)
6
5
8
7
9
4
6
7
4
7
6
5
7
6
4
2
1
-
 -
94 Arabidopsis unknown protein
-
-
-
-
-
-
64
30
-
-
-
-
-
-
-
-
-
-
 -
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