Species in Phytozome v8.0

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Welcome to Phytozome!

Phytozome is a joint project of the Department of Energy's Joint Genome Institute and the Center for Integrative Genomics to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. As of release v8.0, Phytozome provides access to thirty-one sequenced and annotated green plant genomes which have been clustered into gene families at eleven evolutionarily significant nodes. Where possible, each gene has been annotated with PFAM, KOG, KEGG, and PANTHER assignments, and publicly available annotations from RefSeq, UniProt, TAIR, JGI are hyper-linked and searchable.

Using Phytozome: video tutorials
Announcements
  • [16 Jan 2012]   Phytozome v8.0 has been released!
  • [12 Dec 2011]   A service outage for filesystem maintenance is currently scheduled for Tuesday, December 13th, 2011 from approximately 12 AM to 3 PM Pacific Standard Time.
  • [07 Oct 2011]   Release of Thellungiella halophila genome and Biomart sequence issue fixed.
News
  • [16 Jan 2012]  Phytozome v8.0 has been released!
    The lastest version of Phytozome has been released. Version 8 includes 21 genomes assembled and/or annotated at the JGI, and 9 externally produced genomes. Also included are early release access to the Panicum virgatum (switchgrass) genome and annotation, as well as the unannotated assembly of the Cotton D Genome. Update genomes include Eucalyptus, Aquilegia, and the grasses maize, rice and Brachypodium. New JGI genomes include the aforementioned Panicum virgatum genome, as well as Capsella rubella,and Phaseolus vulgaris, while the external genomes Brassica rapa, flax, and apple make their first appearance in Phytozome.
  • [12 Dec 2011]  Service Outage Tuesday, December 13th, 2011
    A service outage for filesystem maintenance is currently scheduled for Tuesday, December 13th, 2011 from approximately 12 AM to 3 PM Pacific Standard Time. The Phytozome website will be inaccessible for this block of time.
  • [07 Oct 2011]  Release of Thellungiella halophila genome and Biomart sequence issue fixed.
    The version 1.0 genome annotation and assembly of Thellungiella halophila (salt cress) is now available as an early release genome. This genome will eventually be included in gene families released in late Fall as part of Phytozome version 8.0. We have also fixed a Biomart issue where large queries sometimes returned coding or peptide sequence with missing exons.
  • [05 Aug 2011]  Service Outage Tuesday, August 9th, 2011
    A service outage for filesystem maintenance is currently scheduled for Tuesday, August 9th, 2011 from approximately 7 AM to 5 PM Pacific Daylight Time. The Phytozome website will be inaccessible for this block of time.
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Early release genomes
Info

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